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Bouskill, Nicholas J., Jinyun Tang, William J. Riley, and Eoin L. Brodie. "Trait-Based representation of biological nitrification: Model development, testing, and predicted community composition." Frontiers in Microbiology 3 (2012).
Liu, Yaning, Gautam Bisht, Zachary M. Subin, William J. Riley, and George Shu Heng Pau. "A hybrid reduced-order model of fine-resolution hydrologic simulations at a polygonal tundra site." Vadose Zone Journal 15, no. 2 (2016).
Xu, Xiyan, William J. Riley, Charles D. Koven, Dave P. Billesbach, Rachel Y. - W. Chang, óisín Commane, énie S. Euskirchen, Sean Hartery, Yoshinobu Harazono, Hiroki Iwata et al. "A multi-scale comparison of modeled and observed seasonal methane emissions in northern wetlands." Biogeosciences 13, no. 17 (2016): 5043-5056.
Muster, Sina, Kurt Roth, Moritz Langer, Stephan Lange, Fabio Cresto Aleina, Annett Bartsch, Anne Morgenstern, Guido Grosse, Benjamin Jones, Britta K. A. Sannel et al. "PeRL: A Circum-Arctic permafrost region pond and lake database." Earth System Science Data Discussions (2016): 1-46.
Ghimire, Bardan, William J. Riley, Charles D. Koven, Mingquan Mu, and James T. Randerson. "Representing leaf and root physiological traits in CLM improves global carbon and nitrogen cycling predictions." Journal of Advances in Modeling Earth Systems 8, no. 2 (2016): 598-613.
Xu, Xiaofeng, Fengming Yuan, PAUL J. HANSON, Stan Wullschleger, Peter E. Thornton, William J. Riley, Xia Song, David E. Graham, Changchun Song, and Hanqin Tian. "Reviews and syntheses: Four decades of modeling methane cycling in terrestrial ecosystems." Biogeosciences 13, no. 12 (2016): 3735-3755.
Zhu, Qing, Colleen Iversen, William J. Riley, Ingrid J. Slette, and Holly M. Vander Stel. "Root traits explain observed tundra vegetation nitrogen uptake patterns: Implications for trait-based land models." Journal of Geophysical Research: Biogeosciences 121, no. 12 (2016): 3101-3112.
Ghimire, Bardan, William J. Riley, Charles D. Koven, Jens Kattge, Alistair Rogers, Peter B. Reich, and Ian J. Wright. "A global trait-based approach to estimate leaf nitrogen functional allocation from observations." Ecological Applications 27, no. 5 (2017): 1421-1434.
Maggi, Federico, and William J. Riley. "Near activation and differential activation in enzymatic reactions." International Journal of Chemical Kinetics 49, no. 5 (2017): 305-318.
Zhu, Qing, William J. Riley, and Jinyun Tang. "A new theory of plant-microbe nutrient competition resolves inconsistencies between observations and model predictions." Ecological Applications 27, no. 3 (2017): 875-886.